PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_19152_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MIKC_MADS
Protein Properties Length: 179aa    MW: 20359.7 Da    PI: 10.0827
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_19152_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.22.1e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien   rqvtfskRr+g+lKKA+EL +LCdaevaviifs+tgkl+e+ss
  Neem_19152_f_1  9 KRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSS 59
                    79***********************************************96 PP

2K-box57.18.1e-20871531581
           K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelq 81 
                     ++  +e++ Lk+ei +Lq+ q +llG+dL+ LslkeLq Leq+L+++l  +++kK++ll+eq+e+++
  Neem_19152_f_1  87 KQDLKEVDVLKDEIAKLQKRQLQLLGKDLNGLSLKELQLLEQELNEGLLLVKEKKEQLLMEQLEQSR 153
                     456689**********************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.8E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.464161IPR002100Transcription factor, MADS-box
CDDcd002658.96E-43272No hitNo description
SuperFamilySSF554559.81E-33276IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.8E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.05386179IPR002487Transcription factor, K-box
PfamPF014864.5E-1489154IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010047Biological Processfruit dehiscence
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0060862Biological Processnegative regulation of floral organ abscission
GO:0060867Biological Processfruit abscission
GO:0071365Biological Processcellular response to auxin stimulus
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MGRGKIEIKR IENANSRQVT FSKRRAGLLK KAQELAILCD AEVAVIIFSN TGKLFEFSSS  60
GMKRTLTRYN KCLDFSEAAV AEYKPEKQDL KEVDVLKDEI AKLQKRQLQL LGKDLNGLSL  120
KELQLLEQEL NEGLLLVKEK KEQLLMEQLE QSRVQRLRSS GVSFRPPTAQ SQHTLSTIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-21169169Myocyte-specific enhancer factor 2B
1tqe_Q1e-21169169Myocyte-specific enhancer factor 2B
1tqe_R1e-21169169Myocyte-specific enhancer factor 2B
1tqe_S1e-21169169Myocyte-specific enhancer factor 2B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00508DAPTransfer from AT5G13790Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006438919.12e-97hypothetical protein CICLE_v10032519mg
RefseqXP_006482951.13e-97PREDICTED: agamous-like MADS-box protein AGL15
SwissprotQ388476e-63AGL15_ARATH; Agamous-like MADS-box protein AGL15
TrEMBLV4VHU73e-97V4VHU7_9R
STRINGPOPTR_0009s06060.12e-79(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75182538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.18e-42AGAMOUS-like 15